"Process-groupComparison function"
"labeled = FALSE"
"scopeOfBioReplication = restricted"
"scopeOfTechReplication = expanded"
"interference = FALSE"
"featureVar = TRUE"
"Time course design of experiment - okay"
"missing.action : impute - okay"
"Finished a comparison for protein  BLM ( 1  of  38 )"
"Finished a comparison for protein  CAF1B ( 2  of  38 )"
"Finished a comparison for protein  CHD4 ( 3  of  38 )"
"Finished a comparison for protein  DEK ( 4  of  38 )"
"Finished a comparison for protein  FEN1 ( 5  of  38 )"
"Finished a comparison for protein  H2AX ( 6  of  38 )"
"Finished a comparison for protein  HCFC1 ( 7  of  38 )"
"Finished a comparison for protein  HDAC1 ( 8  of  38 )"
"Finished a comparison for protein  MBD3 ( 9  of  38 )"
"Finished a comparison for protein  MDC1 ( 10  of  38 )"
"Finished a comparison for protein  MED4 ( 11  of  38 )"
"Finished a comparison for protein  MRE11 ( 12  of  38 )"
"Finished a comparison for protein  MSH2 ( 13  of  38 )"
"Finished a comparison for protein  MTA2 ( 14  of  38 )"
"Finished a comparison for protein  NBN ( 15  of  38 )"
"Finished a comparison for protein  NUCL ( 16  of  38 )"
"Finished a comparison for protein  P53 ( 17  of  38 )"
"Finished a comparison for protein  PARP1 ( 18  of  38 )"
"Finished a comparison for protein  PCNA ( 19  of  38 )"
"Finished a comparison for protein  POLD1 ( 20  of  38 )"
"Finished a comparison for protein  POLR2E ( 21  of  38 )"
"Finished a comparison for protein  PRKDC ( 22  of  38 )"
"Finished a comparison for protein  RALY ( 23  of  38 )"
"Finished a comparison for protein  RBBP4 ( 24  of  38 )"
"Finished a comparison for protein  RPA1 ( 25  of  38 )"
"Finished a comparison for protein  SKIV2 ( 26  of  38 )"
"Finished a comparison for protein  SPT16H ( 27  of  38 )"
"Finished a comparison for protein  SSRP1 ( 28  of  38 )"
"Finished a comparison for protein  SUMO1 ( 29  of  38 )"
"Finished a comparison for protein  TFAM ( 30  of  38 )"
"Finished a comparison for protein  TFDP1 ( 31  of  38 )"
"Finished a comparison for protein  TOP1 ( 32  of  38 )"
"Finished a comparison for protein  TRIM28 ( 33  of  38 )"
"Finished a comparison for protein  WRNIP1 ( 34  of  38 )"
"Finished a comparison for protein  XRCC3 ( 35  of  38 )"
"Finished a comparison for protein  XRCC5 ( 36  of  38 )"
"Finished a comparison for protein  XRCC6 ( 37  of  38 )"
"Finished a comparison for protein  YBOX1 ( 38  of  38 )"
"Comparisons for all proteins are done.- okay"
"Adjust p-values per comparison are calculated - okay."
"Group comparison is done. - okay"
