"Process-dataProcess function"
"The required input : provided - okay"
"New input format : made new columns for analysis - okay"
"Logarithm transformation: log2 transformation is done - okay"
"Balanced data format with NA for missing feature intensities - okay"
"Factorize in columns(GROUP, SUBJECT, GROUP_ORIGINAL, SUBJECT_ORIGINAL, SUBJECT_ORIGINAL_NESTED, FEATURE, RUN) - okay"
"Normalization : no normalization - okay"
"Between Run Interference Score is not calculated."
"1 level of Isotope type labeling in this experiment"
"Summary of Features :"
"# of Protein : 38"
"# of Peptides/Protein : 1-4"
"# of Transitions/Peptide : 3-8"
"Summary of Missingness :"
"  # transitions are completely missing in one condition: 37"
"    -> "
"TSSDNNVSVTNVSVAK_2_y10_1, TSSDNNVSVTNVSVAK_2_y5_1, TSSDNNVSVTNVSVAK_2_y6_1, TSSDNNVSVTNVSVAK_2_y7_1, TSSDNNVSVTNVSVAK_2_y8_1, TSSDNNVSVTNVSVAK_2_y9_1, LLGGVTIAQGGVLPNIQAVLLPK_2_y10_1, LLGGVTIAQGGVLPNIQAVLLPK_2_y11_1, LLGGVTIAQGGVLPNIQAVLLPK_2_y12_1, LLGGVTIAQGGVLPNIQAVLLPK_2_y13_1, LLGGVTIAQGGVLPNIQAVLLPK_2_y14_1, FGYVDFESAEDLEK_2_y10_1, FGYVDFESAEDLEK_2_y11_1, FGYVDFESAEDLEK_2_y7_1, FGYVDFESAEDLEK_2_y8_1, FGYVDFESAEDLEK_2_y9_1, GLSEDTTEETLK_2_y10_1, GLSEDTTEETLK_2_y4_1, GLSEDTTEETLK_2_y6_1, GLSEDTTEETLK_2_y7_1, GLSEDTTEETLK_2_y8_1, FQWDLNAWTK_2_y3_1, FQWDLNAWTK_2_y4_1, FQWDLNAWTK_2_y5_1, FQWDLNAWTK_2_y6_1, FQWDLNAWTK_2_y7_1, LDLDLTADSQPPVFK_2_y10_1, LDLDLTADSQPPVFK_2_y4_1, LDLDLTADSQPPVFK_2_y5_1, LDLDLTADSQPPVFK_2_y7_1, LDLDLTADSQPPVFK_2_y8_1, LDLDLTADSQPPVFK_2_y9_1, LSPPYSSPQEFAQDVGR_2_y10_1, LSPPYSSPQEFAQDVGR_2_y11_1, LSPPYSSPQEFAQDVGR_2_y12_1, LSPPYSSPQEFAQDVGR_2_y6_1, LSPPYSSPQEFAQDVGR_2_y7_1"
"  # run with 75% missing observations: 0"
"Processing data for analysis is done. - okay"
