The attached dataset is a collection of videos taken in an agarose gel model of the brain in order to examine the differences in diffusive behavior between 100 nm carboxyl-modified polystyrene latex nanoparticles (PS-COOH) and PEGylated polystyrene latex nanoparticles (PS-PEG). The data presented are analyzed in the paper submitted to the Journal of Colloids and Surfaces B: Biointerfaces "Colloidal stability as a determinant of nanoparticle behavior in the brain" by Chad Curtis, Dorsa Toghani, Benjamin Wong, and Elizabeth Nance. Subject area: Chemical engineering More specific subject area: Nanoparticles, diffusion, fluorescent microscopy Type of data: TIF files How data was acquired: Fluorescent microscopy Data format: Compressed Data source and location: Seattle, Washington, USA Data acquisition ---------------- 0.4% agarose gels in artificial cerebrospinal fluid (ACSF) (CaCl2 concentrations of 0, 3, 5, and 10 mM, pH 7.2) were prepared by adding 40 mg agarose (low EEO, gel point for 1.5% gel, 36±1.5°C, MilliporeSigma) to ACSF. The agarose-ACSF mixture was heated to 99°C and mixed well until the agarose was completely dissolved, as indicated by no visible particulates in the solution. 400 μL agarose-ACSF was added to a well in an 8-well imaging plate and PS-COOH or PS-PEG nanoparticles were quickly added and mixed until evenly distributed to achieve a concentration of 0.005% solids. Four samples were prepared per particle type-condition combination. The prepared gels were allowed to set overnight at room temperature. Prior to imaging, the gels were allowed to incubate at 37°C and 5% CO2 for 30 min. Five videos were collected per well with four wells at 100 Hz and 40x magnification for 6.5 s via fluorescent microscopy using a cMOS camera (Hamamatsu Photonics, Bridgewater, NJ) mounted on a confocal microscope (Nikon Instruments, Melville, NY). Videos are attached as ND2 files containing all original metadata. Videos are 2048 pixels x 2044 pixels (0.16 μm/pixel) and 651 frames (100.02 frames per second). Videos are organized into folders by the experimental conditions in which they were collected (0mM, 3mM, 5mM, and 10mM CaCl2). Files are named according to the structure "Channel_Functionality_Temp_pH_Well_Video.nd2" with the following parameters: * Channel: RED * Functionality: PEG, nPEG * Temp: 37C * pH: 72 * Well: S1, S1, S3, S4 * Video: 1, 2, 3, 4, 5 To note, due to errors in data acquisition, a few of the files of the given naming structure we not successfully acquired. * 0mM/RED_nPEG_37C_72pH_S4_2.nd2 * 5mM/RED_nPEG_37C_72pH_S4_2.nd2 * 5mM/RED_nPEG_37C_72pH_S4_4.nd2 Original ND2 datafiles can be provided upon request.