Structural Analysis of CavAb, a Prokaryotic Voltage-Gated Calcium Channel

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Swanson, Teresa Mae

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Voltage-­‐gated calcium channels  are  large  membrane  proteins  that  coordinate  the movement  of  calcium into  and  out  of  the  cell  in  response  to  changes  in  membrane potential,  mediating signaling  processes  such  as  muscle contraction  and  synaptic transmission. We used  CavAb,  a  bacterial  calcium  channel, as  a structural model  for three Cav  channel  characteristics;  ion  selectivity,  drug  binding,  and  disease  mutations. First, CavAb reveals three  binding  sites  for  hydrated  calcium  within  the  selectivity  filter  of  the channel,  confirming  the  theory  of  a  “knock-­‐off”  mechanism  of  calcium  selectivity.  Second, CavAb  mimics  mammalian  Cav  antagonist  binding  properties,  providing  visualization  of bound  drug  molecules  and  potential  direction  for  structure  based  drug  design.  Finally, the  addition  of Timothy  Syndrome  disease  mutations  into  CavAb  shows  small conformational  changes,  highlighting  the  potential  importance  of  channel  regulation  by lipids.  Even  though  CavAb  is  a  distant  ancestor  to  the  mammalian  calcium  channels,  it has  proven  to  be  a  valuable  tool  for  answering  classic  calcium  channel  questions.

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Thesis (Ph.D.)--University of Washington, 2016-12

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